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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148519940_148520134_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148519940 - 148520134
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTGACTGCAATT
Flanking Amino Acid:
ERVKRVAYSHTLKQKCLKNI
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
89
0.88
0.7
81.2
36.5
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
43.7
-0.4
2.1
60.07
44.3

Associated Gene:

Gene:
HHLA1
Ensembl Gene ID:
ENSAPLG00000004380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004491
148519896 - 148536299
16404