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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148520218_148520551_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148520218 - 148520551
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTCTCCTAACT
Flanking Amino Acid:
RRKYFRKEAMRYCVEYYSWF
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
83.2
0.75
0.7
81.9
30
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
60.3
0.4
1.7
76.34
39.9

Associated Gene:

Gene:
HHLA1
Ensembl Gene ID:
ENSAPLG00000004380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004491
148519896 - 148536299
16404