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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148529124_148530587_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
148529124 - 148530587
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAAAACA
5'SS Class:
weak_major
3'SS Sequence:
GAAGCACTTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AAAAATTGAATC
Flanking Amino Acid:
ILGNKKKQQQHILGSIFPQH
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1
57.8
34.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
49.9
-0
1.1
46.3
40.3
Minor 5ss
29.9
-2.3
2.9
37.9
40.5
Minor BPS
45.7
-0.3
1.5
49.96
33.2

Associated Gene:

Gene:
HHLA1
Ensembl Gene ID:
ENSAPLG00000004380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004491
148519896 - 148536299
16404