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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148530880_148531458_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148530880 - 148531458
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCATT
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTAACAATGACC
Flanking Amino Acid:
EIFKSTSILSVRQSNDSDCI
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.2
75.6
40
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84
0.77
0.7
82
30
Minor 5ss
47.8
-0.2
2.5
66.8
44.2
Minor BPS
46.5
-0.3
1.9
59.02
39.1

Associated Gene:

Gene:
HHLA1
Ensembl Gene ID:
ENSAPLG00000004380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004491
148519896 - 148536299
16404