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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148532891_148532982_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148532891 - 148532982
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCCAT
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
FHKVSVTVYNISSLKNVDPG
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
64.5
0.36
1.2
72.7
34.4
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
HHLA1
Ensembl Gene ID:
ENSAPLG00000004380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004491
148519896 - 148536299
16404