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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148533067_148533532_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148533067 - 148533532
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TGTATTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTGTTCCAAATG
Flanking Amino Acid:
VNGMLSTALRGTKKLFSLLS
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
83
0.74
0.9
77.4
36.8
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
48.1
-0.2
2
59.04
43.5

Associated Gene:

Gene:
HHLA1
Ensembl Gene ID:
ENSAPLG00000004380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004491
148519896 - 148536299
16404