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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148533682_148536204_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
148533682 - 148536204
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGCTCCGC
5'SS Class:
weak_major
3'SS Sequence:
CCCGTTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATACATAAACC
Flanking Amino Acid:
LVWNTGKDVVCFLLYTIRGL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.2
0.1
1.1
39.8
40.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71
0.47
1
67.6
37.8
Minor 5ss
31.9
-2.1
3.2
39.3
41.2
Minor BPS
50
-0
2
64.45
40.3

Associated Gene:

Gene:
HHLA1
Ensembl Gene ID:
ENSAPLG00000004380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004491
148519896 - 148536299
16404