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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148554520_148556332_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148554520 - 148556332
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATTA
5'SS Class:
major
3'SS Sequence:
TAATTCTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GATATATTAATT
Flanking Amino Acid:
AFSYPSQQSPRNDPYVAKAS
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
76.3
28.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
73.4
36.6
Minor 5ss
35.4
-1.7
3.2
46.9
48.4
Minor BPS
57.2
0.3
1.6
71.89
38.6

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026766
148552323 - 148614068
61746
ENSAPLT00000018869
148552323 - 148614068
61746
ENSAPLT00000004295
148552323 - 148614068
61746