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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148554520_148557113_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148554520 - 148557113
Intron Length:
2594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GATATATTAATT
Flanking Amino Acid:
MLSRIKYLQARNDPYVAKAS
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
73.4
36.6
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
57.2
0.3
1.6
71.89
38.6

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020796
148552323 - 148582605
30283