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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148560544_148561640_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148560544 - 148561640
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCCAT
5'SS Class:
major
3'SS Sequence:
ACCTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACC
Flanking Amino Acid:
KAYAFWQSSEDAGTGEPMGE
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
59.7
46.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73.3
0.52
0.9
65.5
35.5
Minor 5ss
43.7
-0.7
3.3
64.4
47
Minor BPS
78.9
0.89
1
84.85
26.7

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026766
148552323 - 148614068
61746
ENSAPLT00000020796
148552323 - 148582605
30283
ENSAPLT00000018869
148552323 - 148614068
61746
ENSAPLT00000004295
148552323 - 148614068
61746