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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148561829_148569117_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148561829 - 148569117
Intron Length:
7289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
GCTTATTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
FFGSSLTRKLSQKLGLLDRV
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
68
0.45
1
57.8
39
Major PPT
78.4
0.64
0.9
73.1
36.9
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020796
148552323 - 148582605
30283
ENSAPLT00000018869
148552323 - 148614068
61746