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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148569175_148572930_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148569175 - 148572930
Intron Length:
3756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTCTTCACTT
Flanking Amino Acid:
FRKEQLDGTASNVMFSRESF
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.7
0.73
0.8
75.9
32.3
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
62.4
0.47
1.8
83.73
37.9

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020796
148552323 - 148582605
30283
ENSAPLT00000018869
148552323 - 148614068
61746