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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148578545_148580461_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148578545 - 148580461
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATCTGTTTCATT
Flanking Amino Acid:
LGSAICAHSKELITAWYIGF
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.7
0.76
0.8
77.6
35.6
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
48.3
-0
2.1
69.15
43

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026766
148552323 - 148614068
61746
ENSAPLT00000020796
148552323 - 148582605
30283
ENSAPLT00000018869
148552323 - 148614068
61746
ENSAPLT00000004295
148552323 - 148614068
61746