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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148580635_148582418_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148580635 - 148582418
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGCATA
5'SS Class:
major
3'SS Sequence:
TTTCACCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTCACCT
Flanking Amino Acid:
KFARKPLCMLDIFVLIASVP
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.9
43.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.9
0.76
0.8
77.6
30.7
Minor 5ss
41.1
-1
3.2
48.4
47.6
Minor BPS
53.9
0.2
1.8
74.97
42.5

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020796
148552323 - 148582605
30283
ENSAPLT00000018869
148552323 - 148614068
61746
ENSAPLT00000004295
148552323 - 148614068
61746
ENSAPLT00000026766
148552323 - 148614068
61746