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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148584484_148614000_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148584484 - 148614000
Intron Length:
29517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACT
Flanking Amino Acid:
KIQVCMVGKKRFLIVLGCLI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.7
0.83
0.7
78.9
34.3
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
66.1
0.59
1.7
82.56
39.6

Associated Gene:

Gene:
KCNQ3
Ensembl Gene ID:
ENSAPLG00000004166
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026766
148552323 - 148614068
61746
ENSAPLT00000018869
148552323 - 148614068
61746
ENSAPLT00000004295
148552323 - 148614068
61746