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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148780673_148787472_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148780673 - 148787472
Intron Length:
6800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
PSDTMQKNARRSGQVEKLEV
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.81
0.8
83.9
31.1
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
LRRC6
Ensembl Gene ID:
ENSAPLG00000004082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027449
148780486 - 148802460
21975
ENSAPLT00000004196
148780486 - 148802460
21975