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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148792752_148793592_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148792752 - 148793592
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATACTTCAACT
Flanking Amino Acid:
TYIRVLVKGKPFQLVLPEEV
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77
0.61
0.9
72.7
37.3
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
67.4
0.63
1.5
82.57
38.3

Associated Gene:

Gene:
LRRC6
Ensembl Gene ID:
ENSAPLG00000004082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004196
148780486 - 148802460
21975