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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148797101_148797204_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
148797101 - 148797204
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTA
5'SS Class:
weak_major
3'SS Sequence:
CTGTCTTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AATTATAAAACA
Flanking Amino Acid:
EEKRKAKDNIREPKKREKLL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70
36.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
66.4
0.37
1.1
71.1
38.8
Minor 5ss
60.1
0.34
2.5
73
44
Minor BPS
46.1
-0.3
2
60.99
38.6

Associated Gene:

Gene:
LRRC6
Ensembl Gene ID:
ENSAPLG00000004082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027449
148780486 - 148802460
21975
ENSAPLT00000004196
148780486 - 148802460
21975