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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148797394_148798528_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148797394 - 148798528
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAAAA
Flanking Amino Acid:
KQVEAKLGFDSPGSLQNKEN
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.1
0.45
1
65.9
40.6
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
70.2
0.63
1.7
80.92
33.5

Associated Gene:

Gene:
LRRC6
Ensembl Gene ID:
ENSAPLG00000004082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027449
148780486 - 148802460
21975
ENSAPLT00000004196
148780486 - 148802460
21975