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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148836025_148844811_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148836025 - 148844811
Intron Length:
8787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGAAG
5'SS Class:
major
3'SS Sequence:
CTTGTTGTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AAATTCTGAATT
Flanking Amino Acid:
RLEALDYLQKWYPSRIEKID
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
64
41.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69.5
0.44
1.1
67.2
43
Minor 5ss
37.8
-1.4
3.1
44.5
44.7
Minor BPS
63
0.49
1.4
73.36
37.1

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035781
148835619 - 148888108
52490
ENSAPLT00000017915
148835619 - 148888108
52490
ENSAPLT00000003890
148835619 - 148888108
52490
ENSAPLT00000044646
148835619 - 148888108
52490