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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148844984_148845131_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148844984 - 148845131
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTGTTTAAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTGTTTAAAA
Flanking Amino Acid:
EGLKDDEEFVDFKPGEEVLA
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
65.3
39.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
66.7
0.38
1
64.2
40.7
Minor 5ss
35.6
-1.6
3.3
49.5
41.3
Minor BPS
62.4
0.39
1.8
74.83
36.6

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044646
148835619 - 148888108
52490
ENSAPLT00000035781
148835619 - 148888108
52490
ENSAPLT00000017915
148835619 - 148888108
52490
ENSAPLT00000003890
148835619 - 148888108
52490