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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148845217_148846024_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148845217 - 148846024
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTCCATCAATC
Flanking Amino Acid:
PAKIEAINKEGTFTVQFYDG
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
72.2
0.5
0.9
63
38.6
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
54
0.11
1.8
68.35
36.6

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017915
148835619 - 148888108
52490
ENSAPLT00000003890
148835619 - 148888108
52490
ENSAPLT00000044646
148835619 - 148888108
52490
ENSAPLT00000035781
148835619 - 148888108
52490