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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148862052_148864026_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148862052 - 148864026
Intron Length:
1975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
GATCTCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
GCTTCATGAACA
Flanking Amino Acid:
QLPSSVINKTSPSQPLNSPR
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1
63.1
36.8
Major BPS
67.1
0.42
1
59
37.9
Major PPT
76.7
0.6
0.8
73.9
36.4
Minor 5ss
36.1
-1.6
2.9
42.7
39.2
Minor BPS
60.1
0.31
1.8
70.68
40.9

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017915
148835619 - 148888108
52490
ENSAPLT00000003890
148835619 - 148888108
52490
ENSAPLT00000044646
148835619 - 148888108
52490
ENSAPLT00000035781
148835619 - 148888108
52490