Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148864627_148871701_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148864627 - 148871701

Intron Length:

7075

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

GTCTTCTTATTT

Flanking Amino Acid:

TDGRVATTASAPSSHVHALH

Intron Amino Acid Position:

499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

74.1

36.4

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

90.3

0.91

0.7

88.7

Minor 5ss

32.2

-2

40.7

45.1

Minor BPS

0.49

1.6

75.8

41.6

Associated Gene:

Gene:

PHF20L1

Ensembl Gene ID:

ENSAPLG00000003781

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044646

148835619 - 148888108

52490

ENSAPLT00000017915

148835619 - 148888108

52490

ENSAPLT00000003890

148835619 - 148888108

52490