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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148864627_148872115_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148864627 - 148872115
Intron Length:
7489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTAAACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTCTTAAACT
Flanking Amino Acid:
TDGRVATTASGAMRIERKGK
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.3
0.55
0.9
65.8
39.7
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
73.1
0.8
1.6
87.23
39

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035781
148835619 - 148888108
52490