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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148873564_148877415_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148873564 - 148877415
Intron Length:
3852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTAACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
ATTTTTGTAACA
Flanking Amino Acid:
KKKKKKSKQHDYSDYEDSSV
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.1
32.3
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
78.1
0.63
0.9
73.7
41.3
Minor 5ss
35.5
-1.6
2.8
42.4
44.3
Minor BPS
62
0.37
2
76.76
34.5

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035781
148835619 - 148888108
52490
ENSAPLT00000017915
148835619 - 148888108
52490
ENSAPLT00000003890
148835619 - 148888108
52490
ENSAPLT00000044646
148835619 - 148888108
52490