About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148878187_148880113_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148878187 - 148880113
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATGT
Flanking Amino Acid:
LDEENGFMIQCEECLCWQHS
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.5
0.55
1
74
40.4
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
54.7
0.23
2
80.23
41.8

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003890
148835619 - 148888108
52490
ENSAPLT00000044646
148835619 - 148888108
52490
ENSAPLT00000035781
148835619 - 148888108
52490
ENSAPLT00000017915
148835619 - 148888108
52490