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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148882575_148882968_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148882575 - 148882968
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTCTATATAAAT
Flanking Amino Acid:
HGLQLKIGILKNKHHPDLHL
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
77.6
0.62
0.8
73.1
30.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
51.8
0.13
1.9
75.16
41.2

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035781
148835619 - 148888108
52490
ENSAPLT00000017915
148835619 - 148888108
52490
ENSAPLT00000003890
148835619 - 148888108
52490
ENSAPLT00000044646
148835619 - 148888108
52490