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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148886815_148887965_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148886815 - 148887965
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTGTA
5'SS Class:
major
3'SS Sequence:
TTTACTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTATTTTACTT
Flanking Amino Acid:
RMDLIEKEVDVLESWLDFTG
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.2
36.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.2
0.72
0.7
77.9
30.7
Minor 5ss
42
-0.9
3.2
54.9
44.7
Minor BPS
55.1
0.24
1.6
71.2
40.9

Associated Gene:

Gene:
PHF20L1
Ensembl Gene ID:
ENSAPLG00000003781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035781
148835619 - 148888108
52490
ENSAPLT00000017915
148835619 - 148888108
52490
ENSAPLT00000003890
148835619 - 148888108
52490
ENSAPLT00000044646
148835619 - 148888108
52490