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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148898675_148900426_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148898675 - 148900426
Intron Length:
1752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGATGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TAGCATTTACCT
Flanking Amino Acid:
FINIAAANIFEYQTDSQPLR
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.5
0.62
1
73.7
41.7
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
49.4
0.04
1.8
67.47
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047