About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148901710_148902185_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
148901710 - 148902185

Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTT|GTAAGTCAA

5'SS Class:
major

3'SS Sequence:
TCTGGTACTACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTAAC

U12 Branch Point Sequence:
TTTCCTCTAACA

Flanking Amino Acid:
GSKQDGYPISCLSFCQLQKQ

Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.3
0.6
1.1
68.9
37.3

Major BPS
72.3
0.55
1
73.3
28.9

Major PPT
73.4
0.53
1
65.7
39.9

Minor 5ss
36.1
-1.6
3
47.1
42.6

Minor BPS
68.9
0.59
1.6
81.78
32.8

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

148898432 - 148951478
53047