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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148902834_148907297_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148902834 - 148907297
Intron Length:
4464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CCTCCCTGAGCC
Flanking Amino Acid:
MFFDLVHNYNRLPAAFQTFS
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.9
41.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
89.1
0.88
0.7
81.2
36.5
Minor 5ss
32.6
-2
3.7
46.1
49.1
Minor BPS
50.3
-0
1.8
60.78
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047