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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148914315_148915988_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148914315 - 148915988
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATTT
Flanking Amino Acid:
IRGNTGKPMQCPSACQVTAG
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.9
30.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.8
77.4
36.7
Minor 5ss
43.9
-0.7
2.7
58.7
38.8
Minor BPS
59.2
0.37
1.5
73.08
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047