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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148920010_148920677_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148920010 - 148920677
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTGTAATTGATT
Flanking Amino Acid:
AYLFVPYCLETGEYAVLQRS
Intron Amino Acid Position:
1107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
76.8
34.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
77.9
0.63
0.8
77.3
36.7
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
50.2
0.09
1.8
70
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047