About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14892627_14894250_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14892627 - 14894250
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTGTATTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CAGCTTTTAACT
Flanking Amino Acid:
KMPKQLIHIQPFSLDAEQPD
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
71.6
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
1
77.9
40.2
Minor 5ss
37
-1.5
2.6
39.4
38.9
Minor BPS
62.5
0.47
1.3
69.7
41.5

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043045
14847872 - 14913286
65415
ENSAPLT00000028590
14843996 - 14913286
69291
ENSAPLT00000009276
14847872 - 14913286
65415