Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148928806_148929229_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148928806 - 148929229

Intron Length:

424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTTCA

5'SS Class:

strong_major

3'SS Sequence:

TATTGAATTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

CTAACCTTAATT

Flanking Amino Acid:

LKARGFCHLQVDAFGNTISV

Intron Amino Acid Position:

1333

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

79.6

29.3

Major BPS

90.7

1.01

0.7

19.9

Major PPT

63.3

0.3

1.2

61.4

42.6

Minor 5ss

40.6

-1.1

2.7

51.2

45.1

Minor BPS

74.4

0.84

1.3

81.65

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002817

148898432 - 148951478

53047