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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148929387_148933523_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148929387 - 148933523
Intron Length:
4137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTGCTGTATT
Flanking Amino Acid:
ASSLPDLHYIEKAIVGENLI
Intron Amino Acid Position:
1385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.8
0.76
0.6
82.3
22.4
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
52.1
0.15
2.2
80.68
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047