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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148940835_148944975_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148940835 - 148944975
Intron Length:
4141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATCTCTGCATC
Flanking Amino Acid:
DDLLTDNQCLLLRKFERVPA
Intron Amino Acid Position:
1567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
77
33.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
36.4
-1.5
3.2
49.6
39.8
Minor BPS
47.7
-0.2
1.8
61.54
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047