About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14894397_14894511_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14894397 - 14894511
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAT
5'SS Class:
major
3'SS Sequence:
GTTTTACATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGACAATAACA
Flanking Amino Acid:
DRLEKGSGQQPVSLQEAKLL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.1
40.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.9
0.54
0.9
71.8
38.6
Minor 5ss
31.9
-2.1
3.5
47.5
47.9
Minor BPS
49.7
-0
1.9
65.3
40.3

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028590
14843996 - 14913286
69291
ENSAPLT00000009276
14847872 - 14913286
65415
ENSAPLT00000043045
14847872 - 14913286
65415