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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148946744_148947397_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148946744 - 148947397
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAATG
5'SS Class:
major
3'SS Sequence:
TGTTTTGTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GTTGCATTTATT
Flanking Amino Acid:
VNFNCTTSGLVQGVLGNPAA
Intron Amino Acid Position:
1647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
70.6
39.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
80.3
0.68
0.9
72.8
42.2
Minor 5ss
36.6
-1.5
3.1
45.9
43.5
Minor BPS
50.8
0.11
2
73.95
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047