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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14894719_14895097_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14894719 - 14895097
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
GAAACCATAAAA
Flanking Amino Acid:
RRTEKMQTRKNRKNDEASYE
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
77.1
0.61
0.9
69.7
40.7
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
49
-0
1.8
58.36
39.7

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043045
14847872 - 14913286
65415
ENSAPLT00000028590
14843996 - 14913286
69291
ENSAPLT00000009276
14847872 - 14913286
65415