About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148947507_148948754_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148947507 - 148948754
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGAT
5'SS Class:
major
3'SS Sequence:
TCTGTCTATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTCTTTTGAACA
Flanking Amino Acid:
GDTVTVYLKKAQEFNSSGLK
Intron Amino Acid Position:
1683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.2
39.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.8
0.63
0.9
69.8
40.6
Minor 5ss
36.6
-1.5
3.7
55.8
48.4
Minor BPS
60.7
0.33
1.4
67
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002748
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002817
148898432 - 148951478
53047