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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14895247_14896620_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14895247 - 14896620
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AACACTCTAATT
Flanking Amino Acid:
LHLTLEIIEKRYNLGDYSGE
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.2
0.57
0.9
71
38.1
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
49.9
0.07
1.7
64.93
39.7

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028590
14843996 - 14913286
69291
ENSAPLT00000009276
14847872 - 14913286
65415
ENSAPLT00000043045
14847872 - 14913286
65415