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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14898672_14899903_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14898672 - 14899903
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CCCTATATAATT
Flanking Amino Acid:
FARRRVGRGGRVLLDRAHSD
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
79
0.72
1
78.4
31.2
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
47.4
-0.1
1.8
60.84
43.7

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028590
14843996 - 14913286
69291
ENSAPLT00000009276
14847872 - 14913286
65415
ENSAPLT00000043045
14847872 - 14913286
65415