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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148995160_148996103_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148995160 - 148996103
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCACAA
5'SS Class:
major
3'SS Sequence:
TATTCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATTCTTTTAAAG
Flanking Amino Acid:
NKNFNWRSIHRLEMTEDTEN
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
58.9
42
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
77.8
0.62
1
78.7
33.3
Minor 5ss
35.7
-1.6
3.3
47.8
47.6
Minor BPS
60.6
0.19
1.4
64.12
37.5

Associated Gene:

Gene:
SLA
Ensembl Gene ID:
ENSAPLG00000003422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003515
148994940 - 149014512
19573