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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148997731_148998418_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148997731 - 148998418
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTGTTGTAATC
Flanking Amino Acid:
FMIRESETRKGLYSLSVRHR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
81.3
0.71
0.9
72.6
42.4
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
51.3
0.02
2
68.66
38.1

Associated Gene:

Gene:
SLA
Ensembl Gene ID:
ENSAPLG00000003422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003515
148994940 - 149014512
19573