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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_148998523_148999878_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148998523 - 148999878
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
AATTTCAGAACT
Flanking Amino Acid:
PGKYVAKVYHGWLFEGLGRE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
77.3
0.62
0.8
71.2
33.2
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
58.1
0.33
1.7
77.71
37.8

Associated Gene:

Gene:
SLA
Ensembl Gene ID:
ENSAPLG00000003422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003515
148994940 - 149014512
19573