About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149003070_149008703_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149003070 - 149008703
Intron Length:
5634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CCTTCTTTAACA
Flanking Amino Acid:
SAETNVASQTGQESDFLAVL
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80
0.68
0.8
76.2
30.9
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
78.8
0.9
1.2
78.6
38.6

Associated Gene:

Gene:
SLA
Ensembl Gene ID:
ENSAPLG00000003422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003515
148994940 - 149014512
19573