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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149008793_149014037_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
149008793 - 149014037
Intron Length:
5245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTATTCTGAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.9
0.54
0.9
73.3
36.3
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
63.3
0.5
1.8
81.41
40

Associated Gene:

Gene:
SLA
Ensembl Gene ID:
ENSAPLG00000003422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003515
148994940 - 149014512
19573