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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149023108_149023184_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149023108 - 149023184
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTAACCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTGCTAACC
Flanking Amino Acid:
MTRLLAISGPFQY
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.1
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.9
0.38
0.9
59.9
40.7
Minor 5ss
42.7
-0.8
2.9
47.1
48.3
Minor BPS
56.2
0.17
2.3
78.54
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025021
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018101
149022544 - 149049593
27050